Eduardo Eyras

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Dr Eduardo Eyras

Professor - EMBL Australia Group Leader

 https://orcid.org/0000-0003-0793-6218
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
1997 …2024

Research activity per year

Search results

  • 2015

    Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer

    Sebestyén, E., Zawisza, M. & Eyras, E., 18 Feb 2015, In: Nucleic Acids Research. 43, 3, p. 1345-1356 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    135 Citations (Scopus)

  • Leveraging transcript quantification for fast computation of alternative splicing profiles

    Alamancos, G. P., Pagès, A., Trincado, J. L., Bellora, N. & Eyras, E., Sept 2015, In: RNA. 21, 9, p. 1521-1531 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    158 Citations (Scopus)

  • Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB

    Coelho, M. B., Attig, J., Bellora, N., König, J., Hallegger, M., Kayikci, M., Eyras, E., Ule, J. & Smith, C. W., 4 Mar 2015, In: EMBO Journal. 34, 5, p. 653-668 16 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    105 Citations (Scopus)

  • The BioMart community portal: An innovative alternative to large, centralized data repositories

    Smedley, D., Haider, S., Durinck, S., Pandini, L., Provero, P., Allen, J., Arnaiz, O., Awedh, M. H., Baldock, R., Barbiera, G., Bardou, P., Beck, T., Blake, A., Bonierbale, M., Brookes, A. J., Bucci, G., Buetti, I., Burge, S., Cabau, C., Carlson, J. W., & 85 othersChelala, C., Chrysostomou, C., Cittaro, D., Collin, O., Cordova, R., Cutts, R. J., Dassi, E., Di Genova, A., Djari, A., Esposito, A., Estrella, H., Eyras, E., Fernandez-Banet, J., Forbes, S., Free, R. C., Fujisawa, T., Gadaleta, E., Garcia-Manteiga, J. M., Goodstein, D., Gray, K., Guerra-Assunção, J. A., Haggarty, B., Han, D. J., Han, B. W., Harris, T., Harshbarger, J., Hastings, R. K., Hayes, R. D., Hoede, C., Hu, S., Hu, Z. L., Hutchins, L., Kan, Z., Kawaji, H., Keliet, A., Kerhornou, A., Kim, S., Kinsella, R., Klopp, C., Kong, L., Lawson, D., Lazarevic, D., Lee, J. H., Letellier, T., Li, C. Y., Lio, P., Liu, C. J., Luo, J., Maass, A., Mariette, J., Maurel, T., Merella, S., Mohamed, A. M., Moreews, F., Nabihoudine, I., Ndegwa, N., Noirot, C., Perez-Llamas, C., Primig, M., Quattrone, A., Quesneville, H., Rambaldi, D., Reecy, J., Riba, M., Rosanoff, S., Saddiq, A. A., Salas, E., Sallou, O., Shepherd, R., Simon, R., Sperling, L., Spooner, W., Staines, D. M., Steinbach, D., Stone, K., Stupka, E., Teague, J. W., Dayem Ullah, A. Z., Wang, J., Ware, D., Wong-Erasmus, M., Youens-Clark, K., Zadissa, A., Zhang, S. J. & Kasprzyk, A., 1 Jul 2015, In: Nucleic Acids Research. 43, W1, p. W589-W598

    Research output: Contribution to journal › Article › peer-review

    Open Access
    539 Citations (Scopus)
  • 2014

    A Global Regulatory Mechanism for Activating an Exon Network Required for Neurogenesis

    Raj, B., Irimia, M., Braunschweig, U., Sterne-Weiler, T., O'Hanlon, D., Lin, Z-Y., Chen, G. I., Easton, L. E., Ule, J., Gingras, A-C., Eyras, E. & Blencowe, B. J., 2 Oct 2014, In: Molecular Cell. 56, 1, p. 90-103 14 p.

    Research output: Contribution to journal › Article › peer-review

    93 Citations (Scopus)

  • Approaches to link RNA secondary structures with splicing regulation

    Plass, M. & Eyras, E., 2014, Spliceosomal Pre-mRNA Splicing: Methods and Protocols. Humana Press Inc., p. 341-356 16 p. (Methods in Molecular Biology; vol. 1126).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    Open Access
    2 Citations (Scopus)

  • Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells

    Alló, M., Agirre, E., Bessonovc, S., Bertucci, P., Acuña, L. G., Buggiano, V., Bellorab, N., Singhb, B., Petrillo, E., Blaustein, M., Miñana, B., Dujardin, G., Pozzi, B., Pelisch, F., Bechara, E., Agafonov, D. E., Srebrow, A., Lührmann, R., Valcárcel, J., Eyras, E., & 1 othersKornblihtt, A. R., 4 Nov 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 44, p. 15622-15629 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    74 Citations (Scopus)

  • Drosha Regulates Gene Expression Independently of RNA Cleavage Function (vol 5, pg 1499, 2013)

    Gromak, N., Dienstbier, M., Macias, S., Plass, M., Eyras, E., Caceres, J. F. & Proudfoot, N. J., 12 Jun 2014, In: Cell Reports. 7, 5, p. 1753-1754 2 p.

    Research output: Contribution to journal › Article › peer-review

    2 Citations (Scopus)

  • Methods to study splicing from high-throughput RNA sequencing data

    Alamancos, G. P., Agirre, E. & Eyras, E., 2014, Spliceosomal Pre-mRNA Splicing: Methods and Protocols. Humana Press Inc., p. 357-397 41 p. (Methods in Molecular Biology; vol. 1126).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    Open Access
    52 Citations (Scopus)

  • Regulation of FAS Exon Definition and Apoptosis by the Ewing Sarcoma Protein

    Paronetto, M. P., Bernardis, I., Volpe, E., Bechara, E., Sebestyén, E., Eyras, E. & Valcárcel, J., 22 May 2014, In: Cell Reports. 7, 4, p. 1211-1226 16 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    43 Citations (Scopus)

  • The translational landscape of the splicing factor SRSF1 and its role in mitosis

    Maslon, M. M., Heras, S. R., Bellora, N., Eyras, E. & Caceres, J. F., 6 May 2014, In: eLife. 3, 64 p., e02028.

    Research output: Contribution to journal › Article › peer-review

    97 Citations (Scopus)
  • 2013

    Drosha Regulates Gene Expression Independently of RNA Cleavage Function

    Gromak, N., Dienstbier, M., Macias, S., Plass, M., Eyras, E., Caceres, J. F. & Proudfoot, N. J., Dec 2013, In: Cell Reports. 5, 6, p. 1499-1510 12 p.

    Research output: Contribution to journal › Article › peer-review

    56 Citations (Scopus)

  • Nucleosome-Driven Transcription Factor Binding and Gene Regulation

    Ballare, C., Castellano, G., Gaveglia, L., Althammer, S., Gonzalez-Vallinas, J., Eyras, E., Le Dily, F., Zaurin, R., Soronellas, D., Vicent, G. P. & Beato, M., 10 Jan 2013, In: Molecular Cell. 49, 1, p. 67-79 13 p.

    Research output: Contribution to journal › Article › peer-review

    112 Citations (Scopus)

  • RBM5, 6, and 10 Differentially Regulate NUMB Alternative Splicing to Control Cancer Cell Proliferation

    Bechara, E. G., Sebestyen, E., Bernardis, I., Eyras, E. & Valcarcel, J., 12 Dec 2013, In: Molecular Cell. 52, 5, p. 720-733 14 p.

    Research output: Contribution to journal › Article › peer-review

    267 Citations (Scopus)

  • The 5' untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells

    Zhang, Z., Falaleeva, M., Agranat-Tamir, L., Pages, A., Eyras, E., Sperling, J., Sperling, R. & Stamm, S., Oct 2013, In: Experimental Brain Research. 230, 4, p. 387-394 8 p.

    Research output: Contribution to journal › Article › peer-review

    18 Citations (Scopus)

  • The Microprocessor controls the activity of mammalian retrotransposons

    Heras, S. R., Macias, S., Plass, M., Fernandez, N., Cano, D., Eyras, E., Garcia-Perez, J. L. & Caceres, J. F., Oct 2013, In: Nature Structural and Molecular Biology. 20, 10, p. 1173-+ 11 p.

    Research output: Contribution to journal › Article › peer-review

    90 Citations (Scopus)
  • 2012

    DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

    Macias, S., Plass, M., Stajuda, A., Michlewski, G., Eyras, E. & Caceres, J. F., Aug 2012, In: Nature Structural and Molecular Biology. 19, 8, p. 760-766 7 p.

    Research output: Contribution to journal › Article › peer-review

    175 Citations (Scopus)

  • Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling

    Nadal-Ribelles, M., Conde, N., Flores, O., Gonzalez-Vallinas, J., Eyras, E., Orozco, M., de Nadal, E. & Posas, F., 2012, In: Genome Biology. 13, 11, 11 p., R106.

    Research output: Contribution to journal › Article › peer-review

    47 Citations (Scopus)

  • Key contribution of CPEB4-mediated translational control to cancer progression

    Ortiz-Zapater, E., Pineda, D., Martinez-Bosch, N., Fernandez-Miranda, G., Iglesias, M., Alameda, F., Moreno, M., Eliscovich, C., Eyras, E., Real, F. X., Mendez, R. & Navarro, P., Jan 2012, In: Nature Medicine. 18, 1, p. 83-90 8 p.

    Research output: Contribution to journal › Article › peer-review

    125 Citations (Scopus)

  • Predictive Models of Gene Regulation from High-Throughput Epigenomics Data

    Althammer, S., Pages, A. & Eyras, E., 2012, In: Comparative and Functional Genomics. 13 p., 284786.

    Research output: Contribution to journal › Article › peer-review

    12 Citations (Scopus)

  • Pyicos: A flexible tool library for analyzing protein-nucleotide interactions with mapped reads from deep sequencing

    González-Vallinas, J., Althammer, S. & Eyras, E., 2012, Bioinformatics for Personalized Medicine - 10th Spanish Symposium, JBI 2010, Revised Selected Papers. p. 83-88 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6620 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • RNA secondary structure mediates alternative 3′ss selection in <i>Saccharomyces cerevisiae</i>

    Plass, M., Codony-Servat, C., Gabriel Ferreira, P., Vilardell, J. & Eyras, E., Jun 2012, In: RNA. 18, 6, p. 1103-1115 13 p.

    Research output: Contribution to journal › Article › peer-review

    31 Citations (Scopus)

  • Use of ChIP-Seq data for the design of a multiple promoter-alignment method

    Erb, I., Gonzalez-Vallinas, J. R., Bussotti, G., Blanco, E., Eyras, E. & Notredame, C., Apr 2012, In: Nucleic Acids Research. 40, 7, 11 p., e52.

    Research output: Contribution to journal › Article › peer-review

    20 Citations (Scopus)
  • 2011

    Databases and resources for human small non-coding RNAs

    Agirre, E. & Eyras, E., Mar 2011, In: Human Genomics. 5, 3, p. 192-199 8 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    11 Citations (Scopus)

  • Deciphering 3′ss Selection in the Yeast Genome Reveals an RNA Thermosensor that Mediates Alternative Splicing

    Meyer, M., Plass, M., Perez-Valle, J., Eyras, E. & Vilardell, J., 16 Sept 2011, In: Molecular Cell. 43, 6, p. 1033-1039 7 p.

    Research output: Contribution to journal › Article › peer-review

    83 Citations (Scopus)

  • Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression

    Shen, M., Eyras, E., Wu, J., Khanna, A., Josiah, S., Rederstorff, M., Zhang, M. Q. & Stamm, S., Dec 2011, In: Nucleic Acids Research. 39, 22, p. 9720-9730 11 p.

    Research output: Contribution to journal › Article › peer-review

    35 Citations (Scopus)

  • Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data

    Althammer, S., Gonzalez-Vallinas, J., Ballare, C., Beato, M. & Eyras, E., 15 Dec 2011, In: Bioinformatics. 27, 24, p. 3333-3340 8 p.

    Research output: Contribution to journal › Article › peer-review

    72 Citations (Scopus)

  • Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation

    Fernandez, N., Fernandez-Miragall, O., Ramajo, J., Garcia-Sacristan, A., Bellora, N., Eyras, E., Briones, C. & Martinez-Salas, E., Oct 2011, In: Nucleic Acids Research. 39, 19, p. 8572-8585 14 p.

    Research output: Contribution to journal › Article › peer-review

    53 Citations (Scopus)
  • 2010

    Chromatin and Alternative Splicing

    Allo, M., Schor, I. E., Munoz, M. J., de la Mata, M., Agirre, E., Valcarcel, J., Eyras, E., Kornblihtt, A. R. & Press, C. S. H. L., 2010, Nuclear Organization And Function. Cold Spring Harbor Laboratory Press, Vol. 75. p. 103-111 9 p. (Cold Spring Harbor Symposia On Quantitative Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    33 Citations (Scopus)

  • Genome-Wide Association between Branch Point Properties and Alternative Splicing

    Corvelo, A., Hallegger, M., Smith, C. W. J. & Eyras, E., Nov 2010, In: PLoS Computational Biology. 6, 11, 13 p., e1001016.

    Research output: Contribution to journal › Article › peer-review

    160 Citations (Scopus)
  • 2009

    Astd: The Alternative Splicing and Transcript Diversity database

    Koscielny, G., Le Texier, V., Gopalakrishnan, C., Kumanduri, V., Riethoven, J-J., Nardone, F., Stanley, E., Fallsehr, C., Hofmann, O., Kull, M., Harrington, E., Boue, S., Eyras, E., Plass, M., Lopez, F., Ritchie, W., Moucadel, V., Ara, T., Pospisil, H., Herrmann, A., & 9 othersReich, J. G., Guigo, R., Bork, P., Doeberitz, M. V. K., Vilo, J., Hide, W., Apweiler, R., Thanaraj, T. A. & Gautheret, D., Mar 2009, In: Genomics. 93, 3, p. 213-220 8 p.

    Research output: Contribution to journal › Article › peer-review

    81 Citations (Scopus)

  • Control of alternative splicing through siRNA-mediated transcriptional gene silencing

    Allo, M., Buggiano, V., Fededa, J. P., Petrillo, E., Schor, I., de la Mata, M., Agirre, E., Plass, M., Eyras, E., Abou Elela, S., Klinck, R., Chabot, B. & Kornblihtt, A. R., Jul 2009, In: Nature Structural and Molecular Biology. 16, 7, p. 717-U43 9 p.

    Research output: Contribution to journal › Article › peer-review

    279 Citations (Scopus)

  • The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

    24 Apr 2009, In: Science. 324, 5926, p. 522-528 7 p.

    Research output: Contribution to journal › Article › peer-review

    959 Citations (Scopus)

  • The Pivotal Roles of TIA Proteins in 5′ Splice-Site Selection of <i>Alu</i> Exons and Across Evolution

    Gal-Mark, N., Schwartz, S., Ram, O., Eyras, E. & Ast, G., Nov 2009, In: PLoS Genetics. 5, 11, 13 p., e1000717.

    Research output: Contribution to journal › Article › peer-review

    33 Citations (Scopus)
  • 2008

    Co-evolution of the branch site and SR proteins in eukaryotes

    Plass, M., Agirre, E., Reyes, D., Camara, F. & Eyras, E., Dec 2008, In: Trends in Genetics. 24, 12, p. 590-594 5 p.

    Research output: Contribution to journal › Article › peer-review

    33 Citations (Scopus)

  • Exon creation and establishment in human genes

    Corvelo, A. & Eyras, E., 2008, In: Genome Biology. 9, 9, 17 p., R141.

    Research output: Contribution to journal › Article › peer-review

    35 Citations (Scopus)

  • Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

    Schwartz, S. H., Silva, J., Burstein, D., Pupko, T., Eyras, E. & Ast, G., Jan 2008, In: Genome Research. 18, 1, p. 88-103 16 p.

    Research output: Contribution to journal › Article › peer-review

    125 Citations (Scopus)
  • 2007

    Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P., & 291 othersBoyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Drenkow, J., Bell, I., Zhao, X., Srinivasan, K. G., Sung, W. K., Ooi, H. S., Chiu, K. P., Foissac, S., Alioto, T., Brent, M., Pachter, L., Tress, M. L., Valencia, A., Choo, S. W., Choo, C. Y., Ucla, C., Manzano, C., Wyss, C., Cheung, E., Clark, T. G., Brown, J. B., Ganesh, M., Patel, S., Tammana, H., Chrast, J., Henrichsen, C. N., Kai, C., Kawai, J., Nagalakshmi, U., Wu, J., Lian, Z., Lian, J., Newburger, P., Zhang, X., Bickel, P., Mattick, J. S., Carninci, P., Hayashizaki, Y., Weissman, S., Hubbard, T., Myers, R. M., Rogers, J., Stadler, P. F., Lowe, T. M., Wei, C. L., Ruan, Y., Struhl, K., Gerstein, M., Antonarakis, S. E., Fu, Y., Green, E. D., Karaöz, U., Siepel, A., Taylor, J., Liefer, L. A., Wetterstrand, K. A., Good, P. J., Feingold, E. A., Guyer, M. S., Cooper, G. M., Asimenos, G., Dewey, C. N., Hou, M., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Huang, H., Zhang, N. R., Holmes, I., Mullikin, J. C., Ureta-Vidal, A., Paten, B., Seringhaus, M., Church, D., Rosenbloom, K., Kent, W. J., Stone, E. A., Batzoglou, S., Goldman, N., Hardison, R. C., Haussler, D., Miller, W., Sidow, A., Trinklein, N. D., Zhang, Z. D., Barrera, L., Stuart, R., King, D. C., Ameur, A., Enroth, S., Bieda, M. C., Kim, J., Bhinge, A. A., Jiang, N., Liu, J., Yao, F., Vega, V. B., Lee, C. W. H., Ng, P., Yang, A., Moqtaderi, Z., Zhu, Z., Xu, X., Squazzo, S., Oberley, M. J., Inman, D., Singer, M. A., Richmond, T. A., Munn, K. J., Rada-Iglesias, A., Wallerman, O., Komorowski, J., Fowler, J. C., Couttet, P., Bruce, A. W., Dovey, O. M., Ellis, P. D., Langford, C. F., Nix, D. A., Euskirchen, G., Hartman, S., Urban, A. E., Kraus, P., Van Calcar, S., Heintzman, N., Hoon Kim, T., Wang, K., Qu, C., Hon, G., Luna, R., Glass, C. K., Rosenfeld, M. G., Aldred, S. F., Cooper, S. J., Halees, A., Lin, J. M., Shulha, H. P., Zhang, X., Xu, M., Haidar, J. N. S., Yu, Y., Iyer, V. R., Green, R. D., Wadelius, C., Farnham, P. J., Ren, B., Harte, R. A., Hinrichs, A. S., Trumbower, H., Clawson, H., Hillman-Jackson, J., Zweig, A. S., Smith, K., Thakkapallayil, A., Barber, G., Kuhn, R. M., Karolchik, D., Armengol, L., Bird, C. P., De Bakker, P. I. W., Kern, A. D., Lopez-Bigas, N., Martin, J. D., Stranger, B. E., Woodroffe, A., Davydov, E., Dimas, A., Eyras, E., Hallgrímsdóttir, I. B., Huppert, J., Zody, M. C., Abecasis, G. R., Estivill, X., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Koriabine, M., Nefedov, M., Osoegawa, K., Yoshinaga, Y., Zhu, B. & De Jong, P. J., 14 Jun 2007, In: Nature. 447, 7146, p. 799-816 18 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    4305 Citations (Scopus)

  • Islands of euchromatin-like sequence and expressed of polymorphic sequences within the short arm of human chromosome 21

    Lyle, R., Prandini, P., Osoegawa, K., ten Hallers, B., Humphray, S., Zhu, B., Eyras, E., Castelo, R., Bird, C. P., Gagos, S., Scott, C., Cox, A., Deutsch, S., Ucla, C., Cruts, M., Dahoun, S., She, X., Bena, F., Wang, S-Y., Van Broeckhoven, C., & 6 othersEichler, E. E., Guigo, R., Rogers, J., de Jong, P. J., Reymond, A. & Antonarakis, S. E., Nov 2007, In: Genome Research. 17, 11, p. 1690-1696 7 p.

    Research output: Contribution to journal › Article › peer-review

    21 Citations (Scopus)
  • 2006

    Differentiated evolutionary rates in alternative exons and the implications for splicing regulation

    Plass, M. & Eyras, E., 22 Jun 2006, In: BMC Evolutionary Biology. 6, 12 p., 50.

    Research output: Contribution to journal › Article › peer-review

    23 Citations (Scopus)

  • Egasp: the human ENCODE genome annotation assessment project

    Guigo, R., Flicek, P., Abril, J. F., Reymond, A., Lagarde, J., Denoeud, F., Antonarakis, S., Ashburner, M., Bajic, V. B., Birney, E., Castelo, R., Eyras, E., Ucla, C., Gingeras, T. R., Harrow, J., Hubbard, T., Lewis, S. E. & Reese, M. G., 2006, In: Genome Biology. 7, 31 p., S2.

    Research output: Contribution to journal › Review article › peer-review

  • 2005

    Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes

    Castelo, R., Reymond, A., Wyss, C., Câmara, F., Parra, G., Antonarakis, SE., Guigó, R. & Eyras, E., 2005, In: Nucleic Acids Research. 33, 6, p. 1935-1939 5 p.

    Research output: Contribution to journal › Article › peer-review

    9 Citations (Scopus)

  • Gene finding in the chicken genome

    Eyras, E., Reymond, A., Castelo, R., Bye, JM., Camara, F., Flicek, P., Huckle, EJ., Parra, G., Shteynberg, DD., Wyss, C., Rogers, J., Antonarakis, SE., Birney, E., Guigo, R. & Brent, MR., 30 May 2005, In: BMC Bioinformatics. 6, 12 p., 131.

    Research output: Contribution to journal › Article › peer-review

    28 Citations (Scopus)
  • 2004

    An overview of Ensembl

    Birney, E., Andrews, T. D., Bevan, P., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cuff, J., Curwen, V., Cutts, T., Down, T., Eyras, E., Fernandez-Suarez, X. M., Gane, P., Gibbins, B., Gilbert, J., Hammond, M., Hotz, H. R., Iyer, V., Jekosch, K., & 28 othersKahari, A., Kasprzyk, A., Keefe, D., Keenan, S., Lehvaslaiho, H., McVicker, G., Melsopp, C., Meidl, P., Mongin, E., Pettett, R., Potter, S., Proctor, G., Rae, M., Searle, S., Slater, G., Smedley, D., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Storey, R., Ureta-Vidal, A., Woodwark, K. C., Cameron, G., Durbin, R., Cox, A., Hubbard, T. & Clamp, M., May 2004, In: Genome Research. 14, 5, p. 925-928 4 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    356 Citations (Scopus)

  • Ensembl 2004

    Birney, E., Andrews, D., Bevan, P., Caccamo, M., Cameron, G., Chen, Y., Clarke, L., Coates, G., Cox, T., Cuff, J., Curwen, V., Cutts, T., Down, T., Durbin, R., Eyras, E., Fernandez-Suarez, X. M., Gane, P., Gibbins, B., Gilbert, J., Hammond, M., & 28 othersHotz, H., Iyer, V., Kahari, A., Jekosch, K., Kasprzyk, A., Keefe, D., Keenan, S., Lehvaslaiho, H., McVicker, G., Melsopp, C., Meidl, P., Mongin, E., Pettett, R., Potter, S., Proctor, G., Rae, M., Searle, S., Slater, G., Smedley, D., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Storey, R., Ureta-Vidal, A., Woodwark, C., Clamp, M. & Hubbard, T., 1 Jan 2004, In: Nucleic Acids Research. 32, DATABASE ISS., p. D468-D470

    Research output: Contribution to journal › Article › peer-review

    151 Citations (Scopus)

  • ESTGenes: Alternative splicing from ESTs in Ensembl

    Eyras, E., Caccamo, M., Curwen, V. & Clamp, M., May 2004, In: Genome Research. 14, 5, p. 976-987 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    67 Citations (Scopus)

  • Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line

    Wahl, MB., Caldwell, RB., Kierzek, AM., Arakawa, H., Eyras, E., Hubner, N., Jung, C., Soeldenwagner, M., Cervelli, M., Wang, YD., Liebscher, V. & Buerstedde, JM., 21 Dec 2004, In: BMC Genomics. 5, 11 p., 98.

    Research output: Contribution to journal › Article › peer-review

    9 Citations (Scopus)

  • Finishing the euchromatic sequence of the human genome

    21 Oct 2004, In: Nature. 431, 7011, p. 931-945 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3772 Citations (Scopus)

  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution

    Gibbs, R. A., Weinstock, G. M., Metzker, M. L., Muzny, D. M., Sodergren, E. J., Scherer, S., Scott, G., Steffen, D., Worley, K. C., Burch, P. E., Okwuonu, G., Hines, S., Lewis, L., Deramo, C., Delgado, O., Dugan-Rocha, S., Miner, G., Morgan, M., Hawes, A., Gill, R., & 211 othersHolt, R. A., Adams, M. D., Amanatides, P. G., Baden-Tillson, H., Barnstead, M., Chin, S., Evans, C. A., Ferriera, S., Fosler, C., Glodek, A., Gu, Z., Jennings, D., Kraft, C. L., Nguyen, T., Pfannkoch, C. M., Sitter, C., Sutton, G. G., Venter, J. C., Woodage, T., Smith, D., Lee, H. M., Gustafson, E., Cahill, P., Kana, A., Doucette-Stamm, L., Weinstock, K., Fechtel, K., Weiss, R. B., Dunn, D. M., Green, E. D., Blakesley, R. W., Bouffard, G. G., de Jong, P. J., Osoegawa, K., Zhu, B., Marra, M., Schein, J., Bosdet, I., Fjell, C., Jones, S., Krzywinski, M., Mathewson, C., Siddiqui, A., Wye, N., McPherson, J., Zhao, S., Fraser, C. M., Shetty, J., Shatsman, S., Geer, K., Chen, Y., Abramzon, S., Nierman, W. C., Havlak, P. H., Chen, R., Durbin, K. J., Egan, A., Ren, Y., Song, X. Z., Li, B., Liu, Y., Qin, X., Cawley, S., Worley, K. C., Cooney, A. J., D'Souza, L. M., Martin, K., Wu, J. Q., Gonzalez-Garay, M. L., Jackson, A. R., Kalafus, K. J., McLeod, M. P., Milosavljevic, A., Virk, D., Volkov, A., Wheeler, D. A., Zhang, Z., Bailey, J. A., Eichler, E. E., Tuzun, E., Birney, E., Mongin, E., Ureta-Vidal, A., Woodwark, C., Zdobnov, E., Bork, P., Suyama, M., Torrents, D., Alexandersson, M., Trask, B. J., Young, J. M., Smith, D., Huang, H., Fechtel, K., Wang, H., Xing, H., Daniels, S., Gietzen, D., Schmidt, J., Stevens, K., Vitt, U., Wingrove, J., Camara, F., Albà, M. M., Abril, J. F., Guigo, R., Smit, A., Dubchak, I., Rubin, E. M., Couronne, O., Poliakov, A., Hübner, N., Ganten, D., Goesele, C., Hummel, O., Kreitler, T., Lee, Y. A., Monti, J., Schulz, H., Zimdahl, H., Himmelbauer, H., Lehrach, H., Jacob, H. J., Bromberg, S., Gullings-Handley, J., Jensen-Seaman, M. I., Kwitek, A. E., Lazar, J., Pasko, D., Tonellato, P. J., Twigger, S., Ponting, C. P., Duarte, J. M., Rice, S., Goodstadt, L., Beatson, S. A., Emes, R. D., Winter, E. E., Webber, C., Brandt, P., Nyakatura, G., Adetobi, M., Chiaromonte, F., Elnitski, L., Eswara, P., Hardison, R. C., Hou, M., Kolbe, D., Makova, K., Miller, W., Nekrutenko, A., Riemer, C., Schwartz, S., Taylor, J., Yang, S., Zhang, Y., Lindpaintner, K., Andrews, T. D., Caccamo, M., Clamp, M., Clarke, L., Curwen, V., Durbin, R., Eyras, E., Searle, S. M., Cooper, G. M., Batzoglou, S., Brudno, M., Sidow, A., Stone, E. A., Venter, J. C., Payseur, B. A., Bourque, G., López-Otín, C., Puente, X. S., Chakrabarti, K., Chatterji, S., Dewey, C., Pachter, L., Bray, N., Yap, V. B., Caspi, A., Tesler, S. D. G., Pevzner, P. A., Haussler, S. C. D., Roskin, K. M., Baertsch, R., Clawson, H., Furey, T. S., Hinrichs, A. S., Karolchik, D., Kent, W. J., Rosenbloom, K. R., Trumbower, H., Weirauch, M., Cooper, D. N., Stenson, P. D., Ma, B., Brent, M., Arumugam, M., Shteynberg, D., Copley, R. R., Taylor, M. S., Riethman, H., Mudunuri, U., Peterson, J., Guyer, M., Felsenfeld, A., Old, S., Mockrin, S. & Collins, F., 1 Apr 2004, In: Nature. 428, 6982, p. 493-521 29 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1746 Citations (Scopus)

  • Integrative annotation of 21,037 human genes validated by full-length cDNA clones

    Imanishi, T., Itoh, T., Suzuki, Y., O'Donovan, C., Fukuchi, S., Koyanagi, K. O., Barrero, R. A., Tamura, T., Yamaguchi-Kabata, Y., Tanino, M., Yura, K., Miyazaki, S., Ikeo, K., Homma, K., Kasprzyk, A., Nishikawa, T., Hirakawa, M., Thierry-Mieg, J., Thierry-Mieg, D., Ashurst, J., & 138 othersJia, L., Nakao, M., Thomas, M. A., Mulder, N., Karavidopoulou, Y., Jin, L., Kim, S., Yasuda, T., Lenhard, B., Eveno, E., Suzuki, Y., Yamasaki, C., Takeda, J. I., Gough, C., Hilton, P., Fujii, Y., Sakai, H., Tanaka, S., Amid, C., Bellgard, M., de Fatima Bonaldo, M., Bono, H., Bromberg, S. K., Brookes, A. J., Bruford, E., Carninci, P., Chelala, C., Couillault, C., de Souza, S. J., Debily, M. A., Devignes, M. D., Dubchak, I., Endo, T., Estreicher, A., Eyras, E., Fukami-Kobayashi, K., Gopinath, G. R., Graudens, E., Hahn, Y., Han, M., Han, Z. G., Hanada, K., Hanaoka, H., Harada, E., Hashimoto, K., Hinz, U., Hirai, M., Hishiki, T., Hopkinson, I., Imbeaud, S., Inoko, H., Kanapin, A., Kaneko, Y., Kasukawa, T., Kelso, J., Kersey, P., Kikuno, R., Kimura, K., Korn, B., Kuryshev, V., Makalowska, I., Makino, T., Mano, S., Mariage-Samson, R., Mashima, J., Matsuda, H., Mewes, H. W., Minoshima, S., Nagai, K., Nagasaki, H., Nagata, N., Nigam, R., Ogasawara, O., Ohara, O., Ohtsubo, M., Okada, N., Okido, T., Oota, S., Ota, M., Ota, T., Otsuki, T., Piatier-Tonneau, D., Poustka, A., Ren, S. X., Saitou, N., Sakai, K., Sakamoto, S., Sakate, R., Schupp, I., Servant, F., Sherry, S., Shiba, R., Shimizu, N., Shimoyama, M., Simpson, A. J., Soares, B., Steward, C., Suwa, M., Suzuki, M., Takahashi, A., Tamiya, G., Tanaka, H., Taylor, T., Terwilliger, J. D., Unneberg, P., Veeramachaneni, V., Watanabe, S., Wilming, L., Yasuda, N., Hyang-Yoo, S., Stodolsky, M., Makalowski, W., Go, M., Nakai, K., Takagi, T., Kanehisa, M., Sakaki, Y., Quackenbush, J., Okazaki, Y., Hayashizaki, Y., Hide, W., Chakraborty, R., Nishikawa, K., Sugawara, H., Tateno, Y., Chen, Z., Oishi, M., Tonellato, P., Apweiler, R., Okubo, K., Wagner, L., Wiemann, S., Strausberg, R. L., Isogai, T., Auffray, C., Nomura, N., Gojobori, T. & Sugano, S., 2004, In: PLoS Biology. 2, 6

    Research output: Contribution to journal › Article › peer-review

    Open Access
    276 Citations (Scopus)