Eduardo Eyras

2004

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Hillier, LW., Miller, W., Birney, E., Warren, W., Hardison, RC., Ponting, CP., Bork, P., Burt, DW., Groenen, MAM., Delany, ME., Dodgson, JB., Chinwalla, AT., Cliften, PF., Clifton, SW., Delehaunty, KD., Fronick, C., Fulton, RS., Graves, TA., Kremitzki, C., Layman, D., & 155 othersMagrini, V., McPherson, JD., Miner, TL., Minx, P., Nash, WE., Nhan, MN., Nelson, JO., Oddy, LG., Pohl, CS., Randall-Maher, J., Smith, SM., Wallis, JW., Yang, S., Romanov, MN., Rondelli, CM., Paton, B., Smith, J., Morrice, D., Daniels, L., Tempest, HG., Robertson, L., Masabanda, JS., Griffin, DK., Vignal, A., Fillon, V., Jacobbson, L., Kerje, S., Andersson, L., Crooijmans, RPM., Aerts, J., van der Poel, JJ., Ellegren, H., Caldwell, RB., Hubbard, SJ., Grafham, DV., Kierzek, AM., McLaren, SR., Overton, IM., Arakawa, H., Beattie, KJ., Bezzubov, Y., Boardman, PE., Bonfield, JK., Croning, MDR., Davies, RM., Francis, MD., Humphray, SJ., Scott, CE., Taylor, RG., Tickle, C., Brown, WRA., Rogers, J., Buerstedde, JM., Wilson, SA., Stubbs, L., Ovcharenko, I., Gordon, L., Lucas, S., Miller, MM., Inoko, H., Shiina, T., Kaufman, J., Salomonsen, J., Skjoedt, K., Wong, GKS., Wang, J., Liu, B., Wang, J., Yu, J., Yang, HM., Nefedov, M., Koriabine, M., deJong, PJ., Goodstadt, L., Webber, C., Dickens, NJ., Letunic, I., Suyama, M., Torrents, D., von Mering, C., Zdobnov, EM., Makova, K., Nekrutenko, A., Elnitski, L., Eswara, P., King, DC., Yang, S., Tyekucheva, S., Radakrishnan, A., Harris, RS., Chiaromonte, F., Taylor, J., He, JB., Rijnkels, M., Griffiths-Jones, S., Ureta-Vidal, A., Hoffman, MM., Severin, J., Searle, SMJ., Law, AS., Speed, D., Waddington, D., Cheng, Z., Tuzun, E., Eichler, E., Bao, ZR., Flicek, P., Shteynberg, DD., Brent, MR., Bye, JM., Huckle, EJ., Chatterji, S., Dewey, C., Pachter, L., Kouranov, A., Mourelatos, Z., Hatzigeorgiou, AG., Paterson, AH., Ivarie, R., Brandstrom, M., Axelsson, E., Backstrom, N., Berlin, S., Webster, MT., Pourquie, O., Reymond, A., Ucla, C., Antonarakis, SE., Long, MY., Emerson, JJ., Betrán, E., Dupanloup, I., Kaessmann, H., Hinrichs, AS., Bejerano, G., Furey, TS., Harte, RA., Raney, B., Siepel, A., Kent, WJ., Haussler, D., Eyras, E., Castelo, R., Abril, JF., Castellano, S., Camara, F., Parra, G., Guigo, R., Bourque, G., Tesler, G., Pevzner, PA., Smit, A., Fulton, LA., Mardis, ER. & Wilson, RK., 9 Dec 2004, In: Nature. 432, 7018, p. 695-716 22 p.

Research output: Contribution to journal › Article › peer-review

2259 Citations (Scopus)

The ENCODE (ENCyclopedia of DNA Elements) Project

Feingold, E. A., Good, P. J., Guyer, M. S., Kamholz, S., Liefer, L., Wetterstrand, K., Collins, F. S., Gingeras, T. R., Kampa, D., Sekinger, E. A., Cheng, J., Hirsch, H., Ghosh, S., Zhu, Z., Patel, S., Piccolboni, A., Yang, A., Tammana, H., Bekiranov, S., Kapranov, P., & 177 othersHarrison, R., Church, G., Struhl, K., Ren, B., Kim, T. H., Barrera, L. O., Qu, C., van Calcar, S., Luna, R., Glass, C. K., Rosenfeld, M. G., Guigo, R., Antonarakis, S. E., Birney, E., Brent, M., Pachter, L., Reymond, A., Dermitzakis, E. T., Dewey, C., Keefe, D., Denoeud, F., Lagarde, J., Ashurst, J., Hubbard, T., Wesselink, J. J., Castelo, R., Eyras, E., Myers, R. M., Sidow, A., Batzoglou, S., Trinklein, N. D., Hartman, S. J., Aldred, S. F., Anton, E., Schroeder, D. I., Marticke, S. S., Nguyen, L., Schmutz, J., Grimwood, J., Dickson, M., Cooper, G. M., Stone, E. A., Asimenos, G., Brudno, M., Dutta, A., Karnani, N., Taylor, C. M., Kim, H. K., Robins, G., Stamatoyannopoulos, G., Stamatoyannopoulos, J. A., Dorschner, M., Sabo, P., Hawrylycz, M., Humbert, R., Wallace, J., Yu, M., Navas, P. A., McArthur, M., Noble, W. S., Dunham, I., Koch, C. M., Andrews, R. M., Clelland, G. K., Wilcox, S., Fowler, J. C., James, K. D., Groth, P., Dovey, O. M., Ellis, P. D., Wraight, V. L., Mungall, A. J., Dhami, P., Fiegler, H., Langford, C. F., Carter, N. P., Vetrie, D., Snyder, M., Euskirchen, G., Urban, A. E., Nagalakshmi, U., Rinn, J., Popescu, G., Bertone, P., Hartman, S., Rozowsky, J., Emanuelsson, O., Royce, T., Chung, S., Gerstein, M., Lian, Z., Lian, J., Nakayama, Y., Weissman, S., Stolc, V., Tongprasit, W., Sethi, H., Jones, S., Marra, M., Shin, H., Schein, J., Clamp, M., Lindblad-Toh, K., Chang, J., Jaffe, D. B., Kamal, M., Lander, E. S., Mikkelsen, T. S., Vinson, J., Zody, M. C., de Jong, P. J., Osoegawa, K., Nefedov, M., Zhu, B., Baxevanis, A. D., Wolfsberg, T. G., Crawford, G. E., Whittle, J., Holt, I. E., Vasicek, T. J., Zhou, D., Luo, S., Green, E. D., Bouffard, G. G., Margulies, E. H., Portnoy, M. E., Hansen, N. F., Thomas, P. J., McDowell, J. C., Maskeri, B., Young, A. C., Idol, J. R., Blakesley, R. W., Schuler, G., Miller, W., Hardison, R., Elnitski, L., Shah, P., Salzberg, S. L., Pertea, M., Majoros, W. H., Haussler, D., Thomas, D., Rosenbloom, K. R., Clawson, H., Siepel, A., Kent, W. J., Weng, Z., Jin, S., Halees, A., Burden, H., Karaoz, U., Fu, Y., Yu, Y., Ding, C., Cantor, C. R., Kingston, R. E., Dennis, J., Green, R. D., Singer, M. A., Richmond, T. A., Norton, J. E., Farnham, P. J., Oberley, M. J., Inman, D. R., McCormick, M. R., Kim, H., Middle, C. L., Pirrung, M. C., Fu, X. D., Kwon, Y. S., Ye, Z., Dekker, J., Tabuchi, T. M., Gheldof, N., Dostie, J. & Harvey, S. C., 22 Oct 2004, In: Science. 306, 5696, p. 636-640 5 p.

Research output: Contribution to journal › Review article › peer-review

1863 Citations (Scopus)

The Ensembl automatic gene annotation system

Curwen, V., Eyras, E., Andrews, T. D., Clarke, L., Mongin, E., Searle, S. M. J. & Clamp, M., May 2004, In: Genome Research. 14, 5, p. 942-950 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

308 Citations (Scopus)

2003

Ensembl 2002: Accommodating comparative genomics

Clamp, M., Andrews, D., Barker, D., Bevan, P., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., Durbin, R., Eyras, E., Gilbert, J., Hammond, M., Hubbard, T., Kasprzyk, A., Keefe, D., Lehvaslaiho, H., Iyer, V., & 16 othersMelsopp, C., Mongin, E., Pettett, R., Potter, S., Rust, A., Schmidt, E., Searle, S., Slater, G., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Stupka, E., Ureta-Vidal, A., Vastrik, I. & Birney, E., 1 Jan 2003, In: Nucleic Acids Research. 31, 1, p. 38-42 5 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

203 Citations (Scopus)

2002

Initial sequencing and comparative analysis of the mouse genome

Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T., Bork, P., & 202 othersBotcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigó, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., LaHillier, D. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., Karlsson, E. K., Karolchik, D., Kasprzyk, A., Kawai, J., Keibler, E., Kells, C., Kent, W. J., Kirby, A., Kolbe, D. L., Korf, I., Kucherlapati, R. S., Kulbokas, E. J., Kulp, D., Landers, T., Leger, J. P., Leonard, S., Letunic, I., Levine, R., Li, J., Li, M., Lloyd, C., Lucas, S., Ma, B., Maglott, D. R., Mardis, E. R., Matthews, L., Mauceli, E., Mayer, J. H., McCarthy, M., McCombie, W. R., McLaren, S., McLay, K., McPherson, J. D., Meldrim, J., Meredith, B., Mesirov, J. P., Miller, W., Miner, T. L., Mongin, E., Montgomery, K. T., Morgan, M., Mott, R., Mullikin, J. C., Muzny, D. M., Nash, W. E., Nelson, J. O., Nhan, M. N., Nicol, R., Ning, Z., Nusbaum, C., O'Connor, M. J., Okazaki, Y., Oliver, K., Overton-Larty, E., Pachter, L., Parra, G., Pepin, K. H., Peterson, J., Pevzner, P., Plumb, R., Pohl, C. S., Poliakov, A., Ponce, T. C., Ponting, C. P., Potter, S., Quail, M., Reymond, A., Roe, B. A., Roskin, K. M., Rubin, E. M., Rust, A. G., Santos, R., Sapojnikov, V., Schultz, B., Schultz, J., Schwartz, M. S., Schwartz, S., Scott, C., Seaman, S., Searle, S., Sharpe, T., Sheridan, A., Shownkeen, R., Sims, S., Singer, J. B., Slater, G., Smit, A., Smith, D. R., Spencer, B., Stabenau, A., Stange-Thomann, N., Sugnet, C., Suyama, M., Tesler, G., Thompson, J., Torrents, D., Trevaskis, E., Tromp, J., Ucla, C., Ureta-Vidal, A., Vinson, J. P., von Niederhausern, A. C., Wade, C. M., Wall, M., Weber, R. J., Weiss, R. B., Wendl, M. C., West, A. P., Wetterstrand, K., Wheeler, R., Whelan, S., Wierzbowski, J., Willey, D., Williams, S., Wilson, R. K., Winter, E., Worley, K. C., Wyman, D., Yang, S., Yang, S. P., Zdobnov, E. M., Zody, M. C. & Lander, E. S., 5 Dec 2002, In: Nature. 420, 6915, p. 520-562 43 p.

Research output: Contribution to journal › Article › peer-review

Open Access

5665 Citations (Scopus)

The Ensembl genome database project

Hubbard, T., Barker, D., Birney, E., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., Durbin, R., Eyras, E., Gilbert, J., Hammond, M., Huminiecki, L., Kasprzyk, A., Lehvaslaiho, H., Lijnzaad, P., Melsopp, C., Mongin, E., & 15 othersPettett, R., Pocock, M., Potter, S., Rust, A., Schmidt, E., Searle, S., Slater, G., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Stupka, E., Ureta-Vidal, A., Vastrik, I. & Clamp, M., 1 Jan 2002, In: Nucleic Acids Research. 30, 1, p. 38-41 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1236 Citations (Scopus)

2001

Non-BPS branes in a type-l orbifold

Eyras, E. & Panda, S., 2001, In: Journal of High Energy Physics. 5, 5, p. XLVI-33

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

The heterotic dyonic instanton

Eyras, E., Townsend, P. K. & Zamaklar, M., 2001, In: Journal of High Energy Physics. 5, 5, p. XXLVI-18

Research output: Contribution to journal › Article › peer-review

Open Access

19 Citations (Scopus)

2000

Exotic branes and non-perturbative seven branes

Eyras, E. & Lozano, Y., 8 May 2000, In: Nuclear Physics B. 573, 3, p. 735-767 33 p.

Research output: Contribution to journal › Article › peer-review

Open Access

37 Citations (Scopus)

Kaluza-Klein monopole and 5-brane effective actions

Eyras, E. & Lozano, Y., 2000, In: Fortschritte der Physik. 48, 1-3, p. 103-106 4 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

Space-time-filling branes and strings with sixteen supercharges

Bergshoeff, E., Eyras, E., Halbersma, R., Van der Schaar, J. P., Hull, C. M. & Lozano, Y., 3 Jan 2000, In: Nuclear Physics B. 564, 1-2, p. 29-59 31 p.

Research output: Contribution to journal › Article › peer-review

Open Access