Research output per year
Research output per year
- 1 - 50 out of 88 results
Search results
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2024
Elevation-dependent patterns of borer-mediated snow-gum dieback are associated with subspecies' trait differences and environmental variation
Bryant, C., Ball, M. C., Borevitz, J., Brookhouse, M. T., Carle, H., Cunningham, P., Davey, M., Davies, J., Eason, A., Erskine, J. D., Fuenzalida, T. I., Grishin, D., Harris, R., Kriticos, J., Midson, A., Nicotra, A. B., Nshuti, A., Ward-Jones, J., Yau, Y., Young, O., & 1 others, Mar 2024, In: Austral Ecology. 49, 3, p. 1-26 e13508.Research output: Contribution to journal › Article › peer-review
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Nutrition, Soil Organic Carbon and Sustainability: Multiple Benefits of Agriculture Regeneration
Alders, R., Wingett, K., McFarlane, R. A., Sutherland, S., Borevitz, J. & Covic, N., 2024, Climate Change and Global Health: Primary, Secondary and Tertiary Effects. Butler, C. & Higgs, K. (eds.). CABI International, p. 342-351 18 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Stabilisation of soil organic matter with rock dust partially counteracted by plants
Buss, W., Hasemer, H., Ferguson, S. & Borevitz, J., Jan 2024, In: Global Change Biology. 30, 1, e17052.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Scopus) -
2023
Climatic Drivers of Silicon Accumulation in a Model Grass Operate in Low- but Not High-Silicon Soils
Johnson, S. N., Vandegeer, R. K., Borevitz, J. O., Hartley, S. E., Tissue, D. T. & Hall, C. R., Mar 2023, In: Plants. 12, 5, 995.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Cost-conscious generation of multiplexed short-read DNA libraries for whole-genome sequencing
Jones, A., Stanley, D., Ferguson, S., Schwessinger, B., Borevitz, J. & Warthmann, N., Jan 2023, In: PLoS ONE. 18, 1 January, e0280004.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus
Ferguson, S., Jones, A., Murray, K., Schwessinger, B. & Borevitz, J. O., Mar 2023, In: Molecular Ecology. 32, 6, p. 1271-1287 17 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Scopus) -
2022
DAESim: A dynamic agro-ecosystem simulation model for natural capital assessment
Taghikhah, F., Borevitz, J., Costanza, R. & Voinov, A., Jun 2022, In: Ecological Modelling. 468, 109930.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Genomic consequences of artificial selection during early domestication of a wood fibre crop
Mostert-O'Neill, M. M., Tate, H., Reynolds, S. M., Mphahlele, M. M., van den Berg, G., Verryn, S. D., Acosta, J. J., Borevitz, J. O. & Myburg, A. A., Sept 2022, In: New Phytologist. 235, 5, p. 1944-1956 13 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
GWAS on multiple traits identifies mitochondrial ACONITASE3 as important for acclimation to submergence stress
Meng, X., Li, L., Pascual, J., Rahikainen, M., Yi, C., Jost, R., He, C., Fournier-Level, A., Borevitz, J., Kangasjärvi, S., Whelan, J. & Berkowitz, O., Apr 2022, In: Plant Physiology. 188, 4, p. 2039-2058 20 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
Mineral-enriched biochar delivers enhanced nutrient recovery and carbon dioxide removal
Buss, W., Wurzer, C., Manning, D. A. C., Rohling, E. J., Borevitz, J. & Mašek, O., Dec 2022, In: Communications Earth and Environment. 3, 1, 67.Research output: Contribution to journal › Review article › peer-review
Open Access47 Citations (Scopus) -
Plant collections for conservation and restoration: Can they be adapted and adaptable?
Bragg, J. G., van der Merwe, M., Yap, J. Y. S., Borevitz, J. & Rossetto, M., Aug 2022, In: Molecular Ecology Resources. 22, 6, p. 2171-2182 12 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Species-specific basecallers improve actual accuracy of nanopore sequencing in plants
Ferguson, S., McLay, T., Andrew, R. L., Bruhl, J. J., Schwessinger, B., Borevitz, J. & Jones, A., Dec 2022, In: Plant Methods. 18, 1, 137.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
Phillips, A. L., Ferguson, S., Watson-Haigh, N. S., Jones, A. W., Borevitz, J. O., Burton, R. A. & Atwell, B. J., Dec 2022, In: Scientific Reports. 12, 1, 10823.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
2021
Genomic evidence of introgression and adaptation in a model subtropical tree species, Eucalyptus grandis
Mostert-O'Neill, M. M., Reynolds, S. M., Acosta, J. J., Lee, D. J., Borevitz, J. O. & Myburg, A. A., Feb 2021, In: Molecular Ecology. 30, 3, p. 625-638 14 p.Research output: Contribution to journal › Article › peer-review
Open Access12 Citations (Scopus) -
High-molecular weight DNA extraction, cleanup and size selection for long-read sequencing
Jones, A., Torkel, C., Stanley, D., Nasim, J., Borevitz, J. & Schwessinger, B., Jul 2021, In: PLoS ONE. 16, 7 July, e0253830.Research output: Contribution to journal › Article › peer-review
Open Access27 Citations (Scopus) -
Multi-platform LiDAR approach for detecting coarse woody debris in a landscape with varied ground cover
Shokirov, S., Schaefer, M., Levick, S. R., Jucker, T., Borevitz, J., Abdurahmanov, I. & Youngentob, K., 2021, In: International Journal of Remote Sensing. 42, 24, p. 9316-9342 27 p.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
Utilizing genomics to understand and respond to global climate change
Borevitz, J., Dec 2021, In: Genome Biology. 22, 1, 91.Research output: Contribution to journal › Editorial › peer-review
Open Access6 Citations (Scopus) -
2020
Extending the genotype in brachypodium by including DNA methylation reveals a joint contribution with genetics on adaptive traits
Eichten, S. R., Srivastava, A., Reddiex, A. J., Ganguly, D. R., Heussler, A., Streich, J. C., Wilson, P. B. & Borevitz, J. O., 1 May 2020, In: G3: Genes, Genomes, Genetics. 10, 5, p. 1629-1637 9 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Spatial, climate and ploidy factors drive genomic diversity and resilience in the widespread grass Themeda triandra
Ahrens, C. W., James, E. A., Miller, A. D., Scott, F., Aitken, N. C., Jones, A. W., Lu-Irving, P., Borevitz, J. O., Cantrill, D. J. & Rymer, P. D., 1 Oct 2020, In: Molecular Ecology. 29, 20, p. 3872-3888 17 p.Research output: Contribution to journal › Article › peer-review
Open Access25 Citations (Scopus) -
2019
A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana
Rungrat, T., Almonte, A. A., Cheng, R., Gollan, P. J., Stuart, T., Aro, E. M., Borevitz, J. O., Pogson, B. & Wilson, P. B., May 2019, In: Plant Direct. 3, 5, e00138.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
Environmental resource deficit may drive the evolution of intraspecific trait variation in invasive plant populations
Liu, S., Streich, J., Borevitz, J. O., Rice, K. J., Li, T., Li, B. & Bradford, K. J., 1 Feb 2019, In: Oikos. 128, 2, p. 171-184 14 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
Global diversity of the Brachypodium species complex as a resource for genome-wide association studies demonstrated for agronomic traits in response to climate
Jan 2019, In: Genetics. 211, 1, p. 317-331 15 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
HOME: A histogram based machine learning approach for effective identification of differentially methylated regions
Srivastava, A., Karpievitch, Y. V., Eichten, S. R., Borevitz, J. O. & Lister, R., 16 May 2019, In: BMC Bioinformatics. 20, 1, 253.Research output: Contribution to journal › Article › peer-review
Open Access27 Citations (Scopus) -
Landscape drivers of genomic diversity and divergence in woodland Eucalyptus
Murray, K. D., Janes, J. K., Jones, A., Bothwell, H. M., Andrew, R. L. & Borevitz, J. O., 1 Dec 2019, In: Molecular Ecology. 28, 24, p. 5232-5247 16 p.Research output: Contribution to journal › Article › peer-review
Open Access31 Citations (Scopus) -
Pervasive admixture between eucalypt species has consequences for conservation and assisted migration
von Takach Dukai, B., Jack, C., Borevitz, J., Lindenmayer, D. B. & Banks, S. C., Apr 2019, In: Evolutionary Applications. 12, 4, p. 845-860 16 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
2018
Adaptation genomics: The angel is in the details
Almonte, A. A. & Borevitz, J. O., Oct 2018, In: Plant, Cell and Environment. 41, 10, p. 2244-2246 3 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Axe: Rapid, competitive sequence read demultiplexing using a trie
Murray, K. D. & Borevitz, J. O., 15 Nov 2018, In: Bioinformatics. 34, 22, p. 3924-3925 2 p.Research output: Contribution to journal › Article › peer-review
Open Access46 Citations (Scopus) -
Deep phenotyping: Deep learning for temporal phenotype/genotype classification
Taghavi Namin, S., Esmaeilzadeh, M., Najafi, M., Brown, T. B. & Borevitz, J. O., 4 Aug 2018, In: Plant Methods. 14, 1, 66.Research output: Contribution to journal › Article › peer-review
Open Access135 Citations (Scopus) -
Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change
Supple, M. A., Bragg, J. G., Broadhurst, L. M., Nicotra, A. B., Byrne, M., Andrew, R. L., Widdup, A., Aitken, N. C. & Borevitz, J. O., 24 Apr 2018, In: eLife. 7, e31835.Research output: Contribution to journal › Article › peer-review
Open Access48 Citations (Scopus) -
2017
Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing
Kantarski, T., Larson, S., Zhang, X., DeHaan, L., Borevitz, J., Anderson, J. & Poland, J., 1 Jan 2017, In: Theoretical And Applied Genetics. 130, 1, p. 137-150 14 p.Research output: Contribution to journal › Article › peer-review
41 Citations (Scopus) -
Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain
Ahrens, C. W., Supple, M. A., Aitken, N. C., Cantrill, D. J., Borevitz, J. O. & James, E. A., 1 Jun 2017, In: Annals of Botany. 119, 8, p. 1267-1277 11 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
Isolation by distance and isolation by environment contribute to population differentiation in Protea repens (Proteaceae L.), a widespread South African species
Prunier, R., Akman, M., Kremer, C. T., Aitken, N., Chuah, A., Borevitz, J. & Holsinger, K. E., May 2017, In: American Journal of Botany. 104, 5, p. 674-684 11 p.Research output: Contribution to journal › Article › peer-review
Open Access20 Citations (Scopus) -
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
Murray, K. D., Webers, C., Ong, C. S., Borevitz, J. & Warthmann, N., Sept 2017, In: PLoS Computational Biology. 13, 9, e1005727.Research output: Contribution to journal › Article › peer-review
Open Access31 Citations (Scopus) -
Novel resampling improves statistical power for multiple-trait QTL mapping
Cheng, R., Doerge, R. W. & Borevitz, J., 2017, In: G3: Genes, Genomes, Genetics. 7, 3, p. 813-822 10 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
Rapid recovery gene downregulation during excess-light stress and recovery in arabidopsis
Crisp, P. A., Ganguly, D. R., Smith, A. B., Murray, K. D., Estavillo, G. M., Searle, I., Ford, E., Bogdanović, O., Lister, R., Borevitz, J. O., Eichten, S. R. & Pogson, B. J., 2017, In: Plant Cell. 29, 8, p. 1836-1863 28 p.Research output: Contribution to journal › Article › peer-review
Open Access69 Citations (Scopus) -
2016
DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity
Eichten, S. R., Stuart, T., Srivastava, A., Lister, R. & Borevitz, J. O., Nov 2016, In: Genome Research. 26, 11, p. 1520-1531 12 p.Research output: Contribution to journal › Article › peer-review
Open Access28 Citations (Scopus) -
Genomic Diversity and Climate Adaptation in Brachypodium
Wilson, P., Borevitz, J. & Streich, J., 2016, Genetics and Genomics of Brachypodium. J. P. V. (ed.). Switzerland: Springer International Publishing, Vol. 18. p. 107-127ppResearch output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Genotypic diversity effects on biomass production in native perennial bioenergy cropping systems
Morris, G. P., Hu, Z., Grabowski, P. P., Borevitz, J. O., de Graaff, M. A., Miller, R. M. & Jastrow, J. D., 1 Sept 2016, In: GCB Bioenergy. 8, 5, p. 1000-1014 15 p.Research output: Contribution to journal › Article › peer-review
Open Access19 Citations (Scopus) -
Population and phylogenomic decomposition via genotyping-by-sequencing in Australian Pelargonium
Nicotra, A. B., Chong, C., Bragg, J. G., Ong, C. R., Aitken, N. C., Chuah, A., Lepschi, B. & Borevitz, J. O., 1 May 2016, In: Molecular Ecology. 25, 9, p. 2000-2014 15 p.Research output: Contribution to journal › Article › peer-review
23 Citations (Scopus) -
Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
Stuart, T., Eichten, S. R., Cahn, J., Karpievitch, Y. V., Borevitz, J. O. & Lister, R., 2 Dec 2016, In: eLife. 5, DECEMBER2016, e20777.Research output: Contribution to journal › Article › peer-review
Open Access141 Citations (Scopus) -
Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics
Crisp, P. A., Ganguly, D., Eichten, S. R., Borevitz, J. O. & Pogson, B. J., Feb 2016, In: Science advances. 2, 2, e1501340.Research output: Contribution to journal › Review article › peer-review
Open Access433 Citations (Scopus) -
Toward the rapid domestication of perennial grains: Developing genetic and genomic resources for intermediate wheatgrass
Kantarski, T., DeHaan, L., Poland, J. & Borevitz, J., 22 Feb 2016, Applied Mathematics and Omics to Assess Crop Genetic Resources for Climate Change Adaptive Traits. CRC Press, p. 227-242 16 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery
Rungrat, T., Awlia, M., Brown, T., Cheng, R., Sirault, X., Fajkus, J., Trtilek, M., Furbank, R., Badger, M., Tester, M., Pogson, B., Borevitz, J. & Wilson, P., 2016, In: The Arabidopsis Book. 14, e0185, p. 14pp.Research output: Contribution to journal › Article › peer-review
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2015
A framework for incorporating evolutionary genomics into biodiversity conservation and management
Hoffmann, A., Griffin, P., Dillon, S. K., Catullo, R., Rane, R., Byrne, M., Jordan, R., Oakeshott, J. G., Weeks, A., Joseph, L., Lockhart, P., Borevitz, J. & Sgro, C., 2015, In: Climate Change Responses. 2, 1, p. 1-23Research output: Contribution to journal › Article › peer-review
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Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Lacearia bicolor and evaluating whether a reference genome is necessary to assess homology
Wilson, A. W., Wickett, N. J., Grabowski, P., Fant, J., Borevitz, J. & Mueller, G. M., 1 Jan 2015, In: Mycologia. 107, 1, p. 217-226 10 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Scopus) -
Genomic breeding for food, environment and livelihoods
Rivers, J., Warthmann, N., Pogson, B. J. & Borevitz, J. O., 1 Apr 2015, In: Food Security. 7, 2, p. 375-382 8 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
Genomic variation across landscapes: Insights and applications
Bragg, J. G., Supple, M. A., Andrew, R. L. & Borevitz, J. O., 1 Sept 2015, In: New Phytologist. 207, 4, p. 953-967 15 p.Research output: Contribution to journal › Review article › peer-review
Open Access96 Citations (Scopus) -
2014
A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation
Cazzonelli, C. I., Nisar, N., Roberts, A. C., Murray, K. D., Borevitz, J. O. & Pogson, B. J., 21 Oct 2014, In: Frontiers in Plant Science. 5, OCT, 533.Research output: Contribution to journal › Article › peer-review
Open Access42 Citations (Scopus) -
CmCGG methylation-independent parent-of-origin effects on genome-wide transcript levels in isogenic reciprocal F1 triploid plants
Donoghue, M. T. A., Fort, A., Clifton, R., Zhang, X., McKeown, P. C., Voigt-Zielinksi, M. L., Borevitz, J. O. & Spillane, C., Apr 2014, In: DNA Research. 21, 2, p. 141-151 11 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Gene flow between nascent species: Geographic, genotypic and phenotypic differentiation within and between Aquilegia formosa and A. pubescens
Noutsos, C., Borevitz, J. O. & Hodges, S. A., 1 Nov 2014, In: Molecular Ecology. 23, 22, p. 5589-5598 10 p.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus)