Personal profile
Biography
Rippei Hayashi studied chemistry and biotechnology in the undergraduate (BSc, University of Tokyo, 2002). During his Masters/PhD, he studied the mechanism of orchestrated expression of nuclear-coded mitochondrial genes at transcriptional level, which led him to uncover the regulation of transcription factor's activity upon nuclear import (PhD, University of Tokyo, 2007). He was a Junior Research Fellow of Japan Society of Promotion of Science (JSPS, DC1). For his postdoc, he moved to Cancer Research UK (David Ish-Horowicz Group) in 2008 to study asymmetric mRNA localisation in developing Drosophila oocyte, mechanism of which was and still is largely unknown. This transition led him to get into RNA biology and Drosophila genetics, key combination for his current research. He developed and conducted live-cell imaging-based genetic screen for gurken mRNA localisation in Drosophila oocyte and identified a number of mutants related to transposon silencing, which affect the microtubule organisation thus the trafficking of gurken mRNA. He moved to the Institute of Molecular Biotechnology in Vienna, Austria (IMBA, Julius Brennecke Group) in 2013 to study the mechanism of small RNA-guided transposon silencing and uncovered an unexpected link between splicing regulation and transposon regulation, and clarified the biogenesis pathways of Piwi-interacting RNA (piRNA) in Drosophila. He started his own group in Jan 2018 in the Genome Science Department at the John Curtin School of Medical Researh in the Australian National University. His research interests include transposon silencing, post-transcriptional RNA processing, and organogenesis.
Qualifications
PhD in life science, University of Tokyo (2007)
Research Interests
small RNA-guided gene silencing, pre-mRNA splicing, transposon defence, organogenesis
Research student supervision
- Registered to supervise
Fingerprint
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Collaborations and top research areas from the last five years
Research output
- 6 Article
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Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications
Mateos, P. A., Sethi, A. J., Ravindran, A., Srivastava, A., Woodward, K., Mahmud, S., Kanchi, M., Guarnacci, M., Xu, J., Yuen, Z. W. S., Zhou, Y., Sneddon, A., Hamilton, W., Gao, J., Starrs, L. M., Hayashi, R., Wickramasinghe, V., Zarnack, K., Preiss, T. & Burgio, G. & 3 others, , 9 May 2024, In: Nature Communications. 15, 17 p., 3899.Research output: Contribution to journal › Article › peer-review
66 Citations (Scopus) -
Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants
Australasian Consortium for RNA Diagnostics, Jan 2022, In: Genetics in Medicine. 24, 1, p. 130-145 16 p.Research output: Contribution to journal › Article › peer-review
Open Access76 Citations (Scopus) -
Macrophage development and activation involve coordinated intron retention in key inflammatory regulators
Green, I. D., Pinello, N., Song, R., Lee, Q., Halstead, J. M., Kwok, C. T., Wong, A. C. H., Nair, S. S., Clark, S. J., Roediger, B., Schmitz, U., Larance, M., Hayashi, R., Rasko, J. E. J. & Wong, J. J. L., 9 Jul 2020, In: Nucleic Acids Research. 48, 12, p. 6513-6529 17 p.Research output: Contribution to journal › Article › peer-review
Open Access55 Citations (Scopus) -
Structure-function analysis of microRNA 3′-end trimming by Nibbler
Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Burkard, T. R., Brennecke, J., Ameres, S. L. & Patel, D. J., 1 Dec 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 48, p. 30370-30379 10 p.Research output: Contribution to journal › Article › peer-review
Open Access12 Citations (Scopus) -
Piwi Is Required to Limit Exhaustion of Aging Somatic Stem Cells
Sousa-Victor, P., Ayyaz, A., Hayashi, R., Qi, Y., Madden, D. T., Lunyak, V. V. & Jasper, H., 12 Sept 2017, In: Cell Reports. 20, 11, p. 2527-2537 11 p.Research output: Contribution to journal › Article › peer-review
Open Access73 Citations (Scopus)
Projects
- 2 Finished
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NHMRC Small Equipment Grant 2022 - Luna FX7 Automated Cell Counter - Link to ARIES 41237
Shirokikh, N. (PI), Bruestle, A. (CoI), Burgio, G. (CoI), Enders, A. (CoI), Eyras, E. (CoI), Fischer, T. (CoI), Hayashi, R. (CoI), McMorran, B. (CoI), Preiss, T. (CoI) & Schulte, K.-M. (CoI)
22/07/22 → 31/12/23
Project: Research
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How and why cells decorate their genetic messages
Preiss, T. (PI), Eyras, E. (CoI), Hayashi, R. (CoI), Medenbach, J. (CoI) & Meister, G. (CoI)
1/01/21 → 31/12/24
Project: Research