A novel quartet-based method for phylogenetic inference

B. B. Zhou; M. Tarawneh; C. Wang; A. Y. Zomaya; R. P. Brent

doi:10.1109/BIBE.2005.7

A novel quartet-based method for phylogenetic inference

B. B. Zhou^*, M. Tarawneh, C. Wang, A. Y. Zomaya, R. P. Brent

^*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

7 Citations (Scopus)

Abstract

In this paper we introduce a new quartet-based method. This method makes use of the Bayes (or quartet) weights of quartets as those used in the quartet puzzling. However, all the weights from the related quartets are accumulated to form a global quartet weight matrix. This matrix provides integrated information and can lead us to recursively merge small sub-trees to larger ones until the final single tree is obtained. The experimental results show that the probability for the correct tree to be among a very small number of trees constructed using our method is very high. These significant results open a new research direction to further investigate more efficient algorithms for phylogenetic inference.

Original language	English
Title of host publication	Proceedings - BIBE 2005
Subtitle of host publication	5th IEEE Symposium on Bioinformatics and Bioengineering
Pages	32-39
Number of pages	8
DOIs	https://doi.org/10.1109/BIBE.2005.7
Publication status	Published - 2005
Event	BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering - Minneapolis, MN, United States Duration: 19 Oct 2005 → 21 Oct 2005

Publication series

Name	Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering
Volume	2005

Conference

Conference	BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering
Country/Territory	United States
City	Minneapolis, MN
Period	19/10/05 → 21/10/05

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10.1109/BIBE.2005.7

Cite this

Zhou, B. B., Tarawneh, M., Wang, C., Zomaya, A. Y., & Brent, R. P. (2005). A novel quartet-based method for phylogenetic inference. In Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering (pp. 32-39). Article 1544446 (Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering; Vol. 2005). https://doi.org/10.1109/BIBE.2005.7

@inproceedings{7ce2cfd7d4b24aeab1de1ffad97161f9,

title = "A novel quartet-based method for phylogenetic inference",

abstract = "In this paper we introduce a new quartet-based method. This method makes use of the Bayes (or quartet) weights of quartets as those used in the quartet puzzling. However, all the weights from the related quartets are accumulated to form a global quartet weight matrix. This matrix provides integrated information and can lead us to recursively merge small sub-trees to larger ones until the final single tree is obtained. The experimental results show that the probability for the correct tree to be among a very small number of trees constructed using our method is very high. These significant results open a new research direction to further investigate more efficient algorithms for phylogenetic inference.",

author = "Zhou, {B. B.} and M. Tarawneh and C. Wang and Zomaya, {A. Y.} and Brent, {R. P.}",

year = "2005",

doi = "10.1109/BIBE.2005.7",

language = "English",

isbn = "0769524761",

series = "Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering",

pages = "32--39",

booktitle = "Proceedings - BIBE 2005",

note = "BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering ; Conference date: 19-10-2005 Through 21-10-2005",

}

Zhou, BB, Tarawneh, M, Wang, C, Zomaya, AY & Brent, RP 2005, A novel quartet-based method for phylogenetic inference. in Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering., 1544446, Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering, vol. 2005, pp. 32-39, BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering, Minneapolis, MN, United States, 19/10/05. https://doi.org/10.1109/BIBE.2005.7

A novel quartet-based method for phylogenetic inference. / Zhou, B. B.; Tarawneh, M.; Wang, C. et al.
Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering. 2005. p. 32-39 1544446 (Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering; Vol. 2005).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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T1 - A novel quartet-based method for phylogenetic inference

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AU - Zomaya, A. Y.

AU - Brent, R. P.

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N2 - In this paper we introduce a new quartet-based method. This method makes use of the Bayes (or quartet) weights of quartets as those used in the quartet puzzling. However, all the weights from the related quartets are accumulated to form a global quartet weight matrix. This matrix provides integrated information and can lead us to recursively merge small sub-trees to larger ones until the final single tree is obtained. The experimental results show that the probability for the correct tree to be among a very small number of trees constructed using our method is very high. These significant results open a new research direction to further investigate more efficient algorithms for phylogenetic inference.

AB - In this paper we introduce a new quartet-based method. This method makes use of the Bayes (or quartet) weights of quartets as those used in the quartet puzzling. However, all the weights from the related quartets are accumulated to form a global quartet weight matrix. This matrix provides integrated information and can lead us to recursively merge small sub-trees to larger ones until the final single tree is obtained. The experimental results show that the probability for the correct tree to be among a very small number of trees constructed using our method is very high. These significant results open a new research direction to further investigate more efficient algorithms for phylogenetic inference.

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SN - 9780769524764

T3 - Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering

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BT - Proceedings - BIBE 2005

T2 - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering

Y2 - 19 October 2005 through 21 October 2005

ER -

A novel quartet-based method for phylogenetic inference

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