TY - JOUR
T1 - Assumption-Free Assessment of Corpus Callosum Shape
T2 - Benchmarking and Application
AU - Walsh, Erin I.
AU - Shaw, Marnie E.
AU - Oyarce, Daniela A.Espinoza
AU - Fraser, Mark
AU - Cherbuin, Nicolas
N1 - Publisher Copyright:
© 2019 Erin I. Walsh et al.
PY - 2019
Y1 - 2019
N2 - Shape analysis provides a unique insight into biological processes. This paper evaluates the properties, performance, and utility of elliptical Fourier (eFourier) analysis to operationalise global shape, focussing on the human corpus callosum. 8000 simulated corpus callosum contours were generated, systematically varying in terms of global shape (midbody arch, splenium size), local complexity (surface smoothness), and nonshape characteristics (e.g., rotation). 2088 real corpus callosum contours were manually traced from the PATH study. Performance of eFourier was benchmarked in terms of its capacity to capture and then reconstruct shape and systematically operationalise that shape via principal components analysis.We also compared the predictive performance of corpus callosumvolume, position in Procrustes-aligned Landmark tangent space, and position in eFourier n-dimensional shape space in relation to the Symbol DigitModalities Test. Jaccard index for original vs. reconstructed fromeFourier shapeswas excellent (M=0.98).The combination of eFourier and PCA performed particularly well in reconstructing known n-dimensional shape space but was disrupted by the inclusion of local shape manipulations. For the case study, volume, eFourier, and landmark measures were all correlated. Mixed effect model results indicated all methods detected similar features, but eFourier estimates were most predictive, and of the two shape operationalization techniques had the least error and better model fit. Elliptical Fourier analysis, particularly in combination with principal component analysis, is a powerful, assumption-free and intuitivemethod of quantifying global shape of the corpus callosum and shows great promise for shape analysis in neuroimaging more broadly.
AB - Shape analysis provides a unique insight into biological processes. This paper evaluates the properties, performance, and utility of elliptical Fourier (eFourier) analysis to operationalise global shape, focussing on the human corpus callosum. 8000 simulated corpus callosum contours were generated, systematically varying in terms of global shape (midbody arch, splenium size), local complexity (surface smoothness), and nonshape characteristics (e.g., rotation). 2088 real corpus callosum contours were manually traced from the PATH study. Performance of eFourier was benchmarked in terms of its capacity to capture and then reconstruct shape and systematically operationalise that shape via principal components analysis.We also compared the predictive performance of corpus callosumvolume, position in Procrustes-aligned Landmark tangent space, and position in eFourier n-dimensional shape space in relation to the Symbol DigitModalities Test. Jaccard index for original vs. reconstructed fromeFourier shapeswas excellent (M=0.98).The combination of eFourier and PCA performed particularly well in reconstructing known n-dimensional shape space but was disrupted by the inclusion of local shape manipulations. For the case study, volume, eFourier, and landmark measures were all correlated. Mixed effect model results indicated all methods detected similar features, but eFourier estimates were most predictive, and of the two shape operationalization techniques had the least error and better model fit. Elliptical Fourier analysis, particularly in combination with principal component analysis, is a powerful, assumption-free and intuitivemethod of quantifying global shape of the corpus callosum and shows great promise for shape analysis in neuroimaging more broadly.
UR - http://www.scopus.com/inward/record.url?scp=85121690319&partnerID=8YFLogxK
U2 - 10.1155/2019/8921901
DO - 10.1155/2019/8921901
M3 - Article
SN - 1546-6086
VL - 2019
JO - Concepts in Magnetic Resonance Part A: Bridging Education and Research
JF - Concepts in Magnetic Resonance Part A: Bridging Education and Research
M1 - 8921901
ER -