Hologenome analysis of two marine sponges with different microbiomes

Taewoo Ryu; Loqmane Seridi; Lucas Moitinho-Silva; Matthew Oates; Yi Jin Liew; Charalampos Mavromatis; Xiaolei Wang; Annika Haywood; Feras F. Lafi; Marija Kupresanin; Rachid Sougrat; Majed A. Alzahrani; Emily Giles; Yanal Ghosheh; Celia Schunter; Sebastian Baumgarten; Michael L. Berumen; Xin Gao; Manuel Aranda; Sylvain Foret; Julian Gough; Christian R. Voolstra; Ute Hentschel; Timothy Ravasi

doi:10.1186/s12864-016-2501-0

Hologenome analysis of two marine sponges with different microbiomes

Taewoo Ryu^*, Loqmane Seridi, Lucas Moitinho-Silva, Matthew Oates, Yi Jin Liew, Charalampos Mavromatis, Xiaolei Wang, Annika Haywood, Feras F. Lafi, Marija Kupresanin, Rachid Sougrat, Majed A. Alzahrani, Emily Giles, Yanal Ghosheh, Celia Schunter, Sebastian Baumgarten, Michael L. Berumen, Xin Gao, Manuel Aranda, Sylvain ForetJulian Gough, Christian R. Voolstra, Ute Hentschel, Timothy Ravasi

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

51 Citations (Scopus)

Abstract

Background: Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results: Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions: Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

Original language	English
Article number	158
Journal	BMC Genomics
Volume	17
Issue number	1
DOIs	https://doi.org/10.1186/s12864-016-2501-0
Publication status	Published - 29 Feb 2016

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Ryu, T., Seridi, L., Moitinho-Silva, L., Oates, M., Liew, Y. J., Mavromatis, C., Wang, X., Haywood, A., Lafi, F. F., Kupresanin, M., Sougrat, R., Alzahrani, M. A., Giles, E., Ghosheh, Y., Schunter, C., Baumgarten, S., Berumen, M. L., Gao, X., Aranda, M., ... Ravasi, T. (2016). Hologenome analysis of two marine sponges with different microbiomes. BMC Genomics, 17(1), Article 158. https://doi.org/10.1186/s12864-016-2501-0

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title = "Hologenome analysis of two marine sponges with different microbiomes",

abstract = "Background: Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results: Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions: Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.",

keywords = "Hologenome, Host, Innate immune system, Microbial symbionts, Sponge, Stylissa carteri, Xestospongia testudinaria",

author = "Taewoo Ryu and Loqmane Seridi and Lucas Moitinho-Silva and Matthew Oates and Liew, {Yi Jin} and Charalampos Mavromatis and Xiaolei Wang and Annika Haywood and Lafi, {Feras F.} and Marija Kupresanin and Rachid Sougrat and Alzahrani, {Majed A.} and Emily Giles and Yanal Ghosheh and Celia Schunter and Sebastian Baumgarten and Berumen, {Michael L.} and Xin Gao and Manuel Aranda and Sylvain Foret and Julian Gough and Voolstra, {Christian R.} and Ute Hentschel and Timothy Ravasi",

note = "Publisher Copyright: {\textcopyright} 2016 Ryu et al.",

year = "2016",

month = feb,

day = "29",

doi = "10.1186/s12864-016-2501-0",

language = "English",

volume = "17",

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Ryu, T, Seridi, L, Moitinho-Silva, L, Oates, M, Liew, YJ, Mavromatis, C, Wang, X, Haywood, A, Lafi, FF, Kupresanin, M, Sougrat, R, Alzahrani, MA, Giles, E, Ghosheh, Y, Schunter, C, Baumgarten, S, Berumen, ML, Gao, X, Aranda, M, Foret, S, Gough, J, Voolstra, CR, Hentschel, U & Ravasi, T 2016, 'Hologenome analysis of two marine sponges with different microbiomes', BMC Genomics, vol. 17, no. 1, 158. https://doi.org/10.1186/s12864-016-2501-0

TY - JOUR

T1 - Hologenome analysis of two marine sponges with different microbiomes

AU - Ryu, Taewoo

AU - Seridi, Loqmane

AU - Moitinho-Silva, Lucas

AU - Oates, Matthew

AU - Liew, Yi Jin

AU - Mavromatis, Charalampos

AU - Wang, Xiaolei

AU - Haywood, Annika

AU - Lafi, Feras F.

AU - Kupresanin, Marija

AU - Sougrat, Rachid

AU - Alzahrani, Majed A.

AU - Giles, Emily

AU - Ghosheh, Yanal

AU - Schunter, Celia

AU - Baumgarten, Sebastian

AU - Berumen, Michael L.

AU - Gao, Xin

AU - Aranda, Manuel

AU - Foret, Sylvain

AU - Gough, Julian

AU - Voolstra, Christian R.

AU - Hentschel, Ute

AU - Ravasi, Timothy

PY - 2016/2/29

Y1 - 2016/2/29

N2 - Background: Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results: Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions: Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

AB - Background: Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results: Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions: Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

KW - Hologenome

KW - Host

KW - Innate immune system

KW - Microbial symbionts

KW - Sponge

KW - Stylissa carteri

KW - Xestospongia testudinaria

UR - http://www.scopus.com/inward/record.url?scp=84978763678&partnerID=8YFLogxK

U2 - 10.1186/s12864-016-2501-0

DO - 10.1186/s12864-016-2501-0

M3 - Article

SN - 1471-2164

VL - 17

JO - BMC Genomics

JF - BMC Genomics

IS - 1

M1 - 158

ER -

Hologenome analysis of two marine sponges with different microbiomes

Abstract

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