IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh; Heiko A. Schmidt; Olga Chernomor; Dominik Schrempf; Michael D. Woodhams; Arndt Von Haeseler; Robert Lanfear; Emma Teeling

doi:10.1093/molbev/msaa015

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh^*, Heiko A. Schmidt, Olga Chernomor, Dominik Schrempf, Michael D. Woodhams, Arndt Von Haeseler, Robert Lanfear, Emma Teeling

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

11726 Citations (Scopus)

Abstract

IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.

Original language	English
Pages (from-to)	1530-1534
Number of pages	5
Journal	Molecular Biology and Evolution
Volume	37
Issue number	5
DOIs	https://doi.org/10.1093/molbev/msaa015
Publication status	Published - 1 May 2020

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abstract = "IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.",

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AU - Schmidt, Heiko A.

AU - Chernomor, Olga

AU - Schrempf, Dominik

AU - Woodhams, Michael D.

AU - Von Haeseler, Arndt

AU - Lanfear, Robert

AU - Teeling, Emma

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AB - IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.

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KW - models of sequence evolution

KW - phylogenetics

KW - phylogenomics

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

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