pIQPNNI: Parallel reconstruction of large maximum likelihood phylogenies

Bui Quang Minh; Le Sy Vinh; Arndt von Haeseler; Heiko A. Schmidt

doi:10.1093/bioinformatics/bti594

pIQPNNI: Parallel reconstruction of large maximum likelihood phylogenies

Bui Quang Minh, Le Sy Vinh, Arndt von Haeseler^*, Heiko A. Schmidt

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

64 Citations (Scopus)

Abstract

Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior.

Original language	English
Pages (from-to)	3794-3796
Number of pages	3
Journal	Bioinformatics
Volume	21
Issue number	19
DOIs	https://doi.org/10.1093/bioinformatics/bti594
Publication status	Published - Oct 2005
Externally published	Yes

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title = "pIQPNNI: Parallel reconstruction of large maximum likelihood phylogenies",

abstract = "Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior.",

author = "Minh, {Bui Quang} and Vinh, {Le Sy} and {von Haeseler}, Arndt and Schmidt, {Heiko A.}",

year = "2005",

month = oct,

doi = "10.1093/bioinformatics/bti594",

language = "English",

volume = "21",

pages = "3794--3796",

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issn = "1367-4803",

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AU - Minh, Bui Quang

AU - Vinh, Le Sy

AU - von Haeseler, Arndt

AU - Schmidt, Heiko A.

PY - 2005/10

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N2 - Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior.

AB - Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior.

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DO - 10.1093/bioinformatics/bti594

M3 - Article

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JF - Bioinformatics

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ER -

pIQPNNI: Parallel reconstruction of large maximum likelihood phylogenies

Abstract

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