TY - JOUR
T1 - Prescreening in large populations as a tool for identifying elevated CO2-responsive genotypes in plants
AU - Shimono, Hiroyuki
AU - Farquhar, Graham
AU - Brookhouse, Matthew
AU - Busch, Florian A.
AU - O'Grady, Anthony
AU - Tausz, Michael
AU - Pinkard, Elizabeth A.
N1 - Publisher Copyright:
© CSIRO 2019.
PY - 2019
Y1 - 2019
N2 - Elevated atmospheric CO2 concentration (e[CO2]) can stimulate the photosynthesis and productivity of C3 species including food and forest crops. Intraspecific variation in responsiveness to e[CO2] can be exploited to increase productivity under e[CO2]. However, active selection of genotypes to increase productivity under e[CO2] is rarely performed across a wide range of germplasm, because of constraints of space and the cost of CO2 fumigation facilities. If we are to capitalise on recent advances in whole genome sequencing, approaches are required to help overcome these issues of space and cost. Here, we discuss the advantage of applying prescreening as a tool in large genome-e[CO2] experiments, where a surrogate for e[CO2] was used to select cultivars for more detailed analysis under e[CO2] conditions. We discuss why phenotypic prescreening in population-wide screening for e[CO2] responsiveness is necessary, what approaches could be used for prescreening for e[CO2] responsiveness, and how the data can be used to improve genetic selection of high-performing cultivars. We do this within the framework of understanding the strengths and limitations of genotype-phenotype mapping.
AB - Elevated atmospheric CO2 concentration (e[CO2]) can stimulate the photosynthesis and productivity of C3 species including food and forest crops. Intraspecific variation in responsiveness to e[CO2] can be exploited to increase productivity under e[CO2]. However, active selection of genotypes to increase productivity under e[CO2] is rarely performed across a wide range of germplasm, because of constraints of space and the cost of CO2 fumigation facilities. If we are to capitalise on recent advances in whole genome sequencing, approaches are required to help overcome these issues of space and cost. Here, we discuss the advantage of applying prescreening as a tool in large genome-e[CO2] experiments, where a surrogate for e[CO2] was used to select cultivars for more detailed analysis under e[CO2] conditions. We discuss why phenotypic prescreening in population-wide screening for e[CO2] responsiveness is necessary, what approaches could be used for prescreening for e[CO2] responsiveness, and how the data can be used to improve genetic selection of high-performing cultivars. We do this within the framework of understanding the strengths and limitations of genotype-phenotype mapping.
KW - Breeding
KW - Climate change
KW - Genome-wide association study
KW - Phenotypic plasticity
UR - http://www.scopus.com/inward/record.url?scp=85055554386&partnerID=8YFLogxK
U2 - 10.1071/FP18087
DO - 10.1071/FP18087
M3 - Review article
SN - 1445-4408
VL - 46
SP - 1
EP - 14
JO - Functional Plant Biology
JF - Functional Plant Biology
IS - 1
ER -