PScan 1.0: Flexible software framework for polygon based multiphoton microscopy

Yongxiao Li, Woei Ming Lee

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Citation (Scopus)

    Abstract

    Multiphoton laser scanning microscopes exhibit highly localized nonlinear optical excitation and are powerful instruments for in-vivo deep tissue imaging. Customized multiphoton microscopy has a significantly superior performance for in-vivo imaging because of precise control over the scanning and detection system. To date, there have been several flexible software platforms catered to custom built microscopy systems i.e. ScanImage, HelioScan, MicroManager, that perform at imaging speeds of 30-100fps. In this paper, we describe a flexible software framework for high speed imaging systems capable of operating from 5 fps to 1600 fps. The software is based on the MATLAB image processing toolbox. It has the capability to communicate directly with a high performing imaging card (Matrox Solios eA/XA), thus retaining high speed acquisition. The program is also designed to communicate with LabVIEW and Fiji for instrument control and image processing. Pscan 1.0 can handle high imaging rates and contains sufficient flexibility for users to adapt to their high speed imaging systems.

    Original languageEnglish
    Title of host publicationSPIE BioPhotonics Australasia
    EditorsEwa M. Goldys, Mark R. Hutchinson
    PublisherSPIE
    ISBN (Electronic)9781510604346
    DOIs
    Publication statusPublished - 2016
    EventSPIE BioPhotonics Australasia - Adelaide, Australia
    Duration: 17 Oct 201619 Oct 2016

    Publication series

    NameProceedings of SPIE - The International Society for Optical Engineering
    Volume10013
    ISSN (Print)0277-786X
    ISSN (Electronic)1996-756X

    Conference

    ConferenceSPIE BioPhotonics Australasia
    Country/TerritoryAustralia
    CityAdelaide
    Period17/10/1619/10/16

    Fingerprint

    Dive into the research topics of 'PScan 1.0: Flexible software framework for polygon based multiphoton microscopy'. Together they form a unique fingerprint.

    Cite this