Sausage: Protein threading with flexible force fields

Thomas Huber; Anthony J. Russell; Daniel Ayers; Andrew E. Torda

doi:10.1093/bioinformatics/15.12.1064

Sausage: Protein threading with flexible force fields

Thomas Huber^*, Anthony J. Russell, Daniel Ayers, Andrew E. Torda

^*Corresponding author for this work

Research output: Contribution to journal › Short survey › peer-review

13 Citations (Scopus)

Abstract

Sausage is a protein sequence threading program, but with remarkable run-time flexibility. Using different scripts, it can calculate protein sequence-structure alignments, search structure libraries, swap force fields, create models from alignments, convert file formats and analyse results. There are several different force fields which might be classed as knowledge-based although they do not rely on Boltzmann statistics. Different force fields are used for alignment calculations and subsequent ranking of calculated models. Availability: Freely available to academics at ftp://ftp.rsc.anu.edu.au/pub/torda/sausage/README. Contact: [email protected].

Original language	English
Pages (from-to)	1064-1065
Number of pages	2
Journal	Bioinformatics
Volume	15
Issue number	12
DOIs	https://doi.org/10.1093/bioinformatics/15.12.1064
Publication status	Published - Dec 1999

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AU - Ayers, Daniel

AU - Torda, Andrew E.

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JO - Bioinformatics

JF - Bioinformatics

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ER -

Sausage: Protein threading with flexible force fields

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