TY - GEN
T1 - The NOVA project
T2 - Developments in X-Ray Tomography XI 2017
AU - Schmelzle, Sebastian
AU - Heethoff, Michael
AU - Heuveline, Vincent
AU - Lösel, Philipp
AU - Becker, Jürgen
AU - Beckmann, Felix
AU - Schluenzen, Frank
AU - Hammel, Jörg U.
AU - Kopmann, Andreas
AU - Mexner, Wolfgang
AU - Vogelgesang, Matthias
AU - Jerome, Nicholas Tan
AU - Betz, Oliver
AU - Beutel, Rolf
AU - Wipfler, Benjamin
AU - Blanke, Alexander
AU - Harzsch, Steffen
AU - Hörnig, Marie
AU - Baumbach, Tilo
AU - Van De Kamp, Thomas
N1 - Publisher Copyright:
© 2017 SPIE.
PY - 2017
Y1 - 2017
N2 - Beamtime and resulting SRμCT data are a valuable resource for researchers of a broad scientific community in life sciences. Most research groups, however, are only interested in a specific organ and use only a fraction of their data. The rest of the data usually remains untapped. By using a new collaborative approach, the NOVA project (Network for Online Visualization and synergistic Analysis of tomographic data) aims to demonstrate, that more efficient use of the valuable beam time is possible by coordinated research on different organ systems. The biological partners in the project cover different scientific aspects and thus serve as model community for the collaborative approach. As proof of principle, different aspects of insect head morphology will be investigated (e.g., biomechanics of the mouthparts, and neurobiology with the topology of sensory areas). This effort is accomplished by development of advanced analysis tools for the ever-increasing quantity of tomographic datasets. In the preceding project ASTOR, we already successfully demonstrated considerable progress in semi-automatic segmentation and classification of internal structures. Further improvement of these methods is essential for an efficient use of beam time and will be refined in the current NOVAproject. Significant enhancements are also planned at PETRA III beamline p05 to provide all possible contrast modalities in x-ray imaging optimized to biological samples, on the reconstruction algorithms, and the tools for subsequent analyses and management of the data. All improvements made on key technologies within this project will in the long-term be equally beneficial for all users of tomography instrumentations.
AB - Beamtime and resulting SRμCT data are a valuable resource for researchers of a broad scientific community in life sciences. Most research groups, however, are only interested in a specific organ and use only a fraction of their data. The rest of the data usually remains untapped. By using a new collaborative approach, the NOVA project (Network for Online Visualization and synergistic Analysis of tomographic data) aims to demonstrate, that more efficient use of the valuable beam time is possible by coordinated research on different organ systems. The biological partners in the project cover different scientific aspects and thus serve as model community for the collaborative approach. As proof of principle, different aspects of insect head morphology will be investigated (e.g., biomechanics of the mouthparts, and neurobiology with the topology of sensory areas). This effort is accomplished by development of advanced analysis tools for the ever-increasing quantity of tomographic datasets. In the preceding project ASTOR, we already successfully demonstrated considerable progress in semi-automatic segmentation and classification of internal structures. Further improvement of these methods is essential for an efficient use of beam time and will be refined in the current NOVAproject. Significant enhancements are also planned at PETRA III beamline p05 to provide all possible contrast modalities in x-ray imaging optimized to biological samples, on the reconstruction algorithms, and the tools for subsequent analyses and management of the data. All improvements made on key technologies within this project will in the long-term be equally beneficial for all users of tomography instrumentations.
KW - 3D web visualization
KW - Cooperative data analysis
KW - Data catalog
KW - Insect head
KW - Interactive interfaces
KW - Semi-automatic segmentation
KW - Synchrotron X-ray micro computed tomography
KW - Virtual Reality for scientific data
KW - Visual data browsing
KW - Web portal for scientific data
UR - http://www.scopus.com/inward/record.url?scp=85040454468&partnerID=8YFLogxK
U2 - 10.1117/12.2275959
DO - 10.1117/12.2275959
M3 - Conference contribution
T3 - Proceedings of SPIE - The International Society for Optical Engineering
BT - Developments in X-Ray Tomography XI
A2 - Wang, Ge
A2 - Muller, Bert
PB - SPIE
Y2 - 8 August 2017 through 10 August 2017
ER -