Vitis vinifera (grapevine) lncRNAs are potential regulators of response to necrotrophic fungus, Botrytis cinerea infection

Garima Bhatia; Santosh Kumar Upadhyay; Kashmir Singh

doi:10.1016/j.pmpp.2020.101553

Vitis vinifera (grapevine) lncRNAs are potential regulators of response to necrotrophic fungus, Botrytis cinerea infection

Garima Bhatia, Santosh Kumar Upadhyay, Kashmir Singh^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

Abstract

lncRNAs regulate gene expression at both transcriptional and post-transcriptional levels. Using computational strategy, we identified 47 and 179 V. vinifera lncRNAs and protein coding sequences, respectively in response to necrotrophic fungus- Botrytis cinerea (gray mold). Co-expression analysis-driven functional annotation revealed their association with GO terms for ‘response to stress’, ‘response to biotic stimulus’, ‘defense response to fungus’, etc. Potential involvement of lncRNAs was also observed in key pathways such as stilbenoid biosynthesis, glutathione metabolism, and chitin degradation. Overall, our results indicate that lncRNAs along with other regulators like miRNAs help in modulating plant basal defense response against necrotrophic fungi.

Original language	English
Article number	101553
Journal	Physiological and Molecular Plant Pathology
Volume	112
DOIs	https://doi.org/10.1016/j.pmpp.2020.101553
Publication status	Published - Dec 2020
Externally published	Yes

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@article{67c7bacf975d4f62b67e9b942b807eb3,

title = "Vitis vinifera (grapevine) lncRNAs are potential regulators of response to necrotrophic fungus, Botrytis cinerea infection",

abstract = "lncRNAs regulate gene expression at both transcriptional and post-transcriptional levels. Using computational strategy, we identified 47 and 179 V. vinifera lncRNAs and protein coding sequences, respectively in response to necrotrophic fungus- Botrytis cinerea (gray mold). Co-expression analysis-driven functional annotation revealed their association with GO terms for {\textquoteleft}response to stress{\textquoteright}, {\textquoteleft}response to biotic stimulus{\textquoteright}, {\textquoteleft}defense response to fungus{\textquoteright}, etc. Potential involvement of lncRNAs was also observed in key pathways such as stilbenoid biosynthesis, glutathione metabolism, and chitin degradation. Overall, our results indicate that lncRNAs along with other regulators like miRNAs help in modulating plant basal defense response against necrotrophic fungi.",

keywords = "Botrytis cinerea, Grapevine, Gray mold, Necrotrophic, Vitis vinifera, lncRNAs, miRNAs",

author = "Garima Bhatia and Upadhyay, {Santosh Kumar} and Kashmir Singh",

note = "Publisher Copyright: {\textcopyright} 2020 Elsevier Ltd",

year = "2020",

month = dec,

doi = "10.1016/j.pmpp.2020.101553",

language = "English",

volume = "112",

journal = "Physiological and Molecular Plant Pathology",

issn = "0885-5765",

publisher = "Academic Press",

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TY - JOUR

T1 - Vitis vinifera (grapevine) lncRNAs are potential regulators of response to necrotrophic fungus, Botrytis cinerea infection

AU - Bhatia, Garima

AU - Upadhyay, Santosh Kumar

AU - Singh, Kashmir

PY - 2020/12

Y1 - 2020/12

N2 - lncRNAs regulate gene expression at both transcriptional and post-transcriptional levels. Using computational strategy, we identified 47 and 179 V. vinifera lncRNAs and protein coding sequences, respectively in response to necrotrophic fungus- Botrytis cinerea (gray mold). Co-expression analysis-driven functional annotation revealed their association with GO terms for ‘response to stress’, ‘response to biotic stimulus’, ‘defense response to fungus’, etc. Potential involvement of lncRNAs was also observed in key pathways such as stilbenoid biosynthesis, glutathione metabolism, and chitin degradation. Overall, our results indicate that lncRNAs along with other regulators like miRNAs help in modulating plant basal defense response against necrotrophic fungi.

AB - lncRNAs regulate gene expression at both transcriptional and post-transcriptional levels. Using computational strategy, we identified 47 and 179 V. vinifera lncRNAs and protein coding sequences, respectively in response to necrotrophic fungus- Botrytis cinerea (gray mold). Co-expression analysis-driven functional annotation revealed their association with GO terms for ‘response to stress’, ‘response to biotic stimulus’, ‘defense response to fungus’, etc. Potential involvement of lncRNAs was also observed in key pathways such as stilbenoid biosynthesis, glutathione metabolism, and chitin degradation. Overall, our results indicate that lncRNAs along with other regulators like miRNAs help in modulating plant basal defense response against necrotrophic fungi.

KW - Botrytis cinerea

KW - Grapevine

KW - Gray mold

KW - Necrotrophic

KW - Vitis vinifera

KW - lncRNAs

KW - miRNAs

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U2 - 10.1016/j.pmpp.2020.101553

DO - 10.1016/j.pmpp.2020.101553

M3 - Article

SN - 0885-5765

VL - 112

JO - Physiological and Molecular Plant Pathology

JF - Physiological and Molecular Plant Pathology

M1 - 101553

ER -

Vitis vinifera (grapevine) lncRNAs are potential regulators of response to necrotrophic fungus, Botrytis cinerea infection

Abstract

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